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    U-box domain-containing protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828619, updated on 18-Sep-2024

    Summary

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    Official Full Name
    U-box domain-containing protein kinase family protein
    Primary source
    TAIR:AT4G25160
    Locus tag
    AT4G25160
    See related
    Araport:AT4G25160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24A6.13
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (12903180..12907596, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene peptide met sulfoxide reductase 4 Neighboring gene oleosin 1 Neighboring gene HAD superfamily, subfamily IIIB acid phosphatase Neighboring gene ncRNA Neighboring gene Uncharacterized conserved protein (UCP012943) Neighboring gene RNA polymerase III RPC4 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    2. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_118648.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    U-box domain-containing protein kinase family protein
    NP_194246.2
    • U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT5G61550.1); Has 118360 Blast hits to 115683 proteins in 4597 species: Archae - 135; Bacteria - 13482; Metazoa - 43605; Fungi - 9605; Plants - 33456; Viruses - 341; Other Eukaryotes - 17736 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12903180..12907596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118648.5 → NP_194246.2  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194246.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SW11
      UniProtKB/TrEMBL
      A0A654FSU0
      Conserved Domains (5) summary
      smart00504
      Location:769 → 831
      Ubox; Modified RING finger domain
      cd01989
      Location:21 → 172
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      pfam00069
      Location:480 → 735
      Pkinase; Protein kinase domain
      pfam13863
      Location:353 → 458
      DUF4200; Domain of unknown function (DUF4200)
      cl21453
      Location:486 → 739
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SW11.2

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