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    Ubiquitin carboxyl-terminal hydrolase-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823944, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin carboxyl-terminal hydrolase-related protein
    Primary source
    TAIR:AT3G47890
    Locus tag
    AT3G47890
    See related
    Araport:AT3G47890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (17666927..17673928, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 27 Neighboring gene pseudo Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene Ta11-like non-LTR retrotransposon

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339339.1
    NM_114658.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin carboxyl-terminal hydrolase-related protein
    NP_001319705.1
    • Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT3G47910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17666927..17673928 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339339.1 → NP_001319705.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XIS0, A0A7G2ER24, F4JCR1
      Conserved Domains (3) summary
      pfam00443
      Location:1235 → 1564
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam04780
      Location:286 → 812
      DUF629; Protein of unknown function (DUF629)
      pfam04781
      Location:22 → 131
      DUF627; Protein of unknown function (DUF627)

    2. NM_114658.4 → NP_190372.3  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190372.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XIS0, A0A7G2ER24, F4JCR1
      Conserved Domains (3) summary
      pfam00443
      Location:1235 → 1564
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam04780
      Location:286 → 812
      DUF629; Protein of unknown function (DUF629)
      pfam04781
      Location:22 → 131
      DUF627; Protein of unknown function (DUF627)
    Nucleotide Protein
    Heading Accession and Version

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