U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CAB1 chlorophyll A/B binding protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839871, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CAB1
    Official Full Name
    chlorophyll A/B binding protein 1
    Primary source
    TAIR:AT1G29930
    Locus tag
    AT1G29930
    See related
    Araport:AT1G29930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AB140; CAB140; CELLULOSE SYNTHASE LIKE C8; chlorophyll A/B binding protein 1; CHLOROPHYLL A/B PROTEIN 140; CLSC8; F1N18.3; F1N18_3; LHCB1.3; LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3
    Summary
    Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CAB1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (10477885..10479114)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene chlorophyll A/B binding protein 3 Neighboring gene chlorophyll A/B-binding protein 2 Neighboring gene nuclear RNA polymerase A2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Blue-Light Regulation of the Arabidopsis thaliana Cab1 Gene. Gao J, et al. Plant Physiol, 1994 Apr. PMID 12232164, Free PMC Article
    2. The intergenic region of Arabidopsis thaliana cab1 and cab2 divergent genes functions as a bidirectional promoter. Mitra A, et al. Planta, 2009 Apr. PMID 19169705
    3. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
    4. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
    5. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The intergenic region of Arabidopsis chlorophyll a/b-binding protein cab1, cab2 genes faithfully drives expression of reporter genes.
      Title: The intergenic region of Arabidopsis thaliana cab1 and cab2 divergent genes functions as a bidirectional promoter.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_102733.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chlorophyll binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables chlorophyll binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    chlorophyll A/B binding protein 1
    NP_174286.1
    • chlorophyll A/B binding protein 1 (CAB1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: guard cell, juvenile leaf, cultured cell; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 3 (TAIR:AT1G29910.1); Has 2419 Blast hits to 2339 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2091; Viruses - 0; Other Eukaryotes - 324 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10477885..10479114
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102733.3 → NP_174286.1  chlorophyll A/B binding protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174286.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P04778
      UniProtKB/TrEMBL
      A0A178WFB8, A0A178WKX1, A0A5S9WF05
      Conserved Domains (1) summary
      PLN00025
      Location:5 → 267
      PLN00025; photosystem II light harvesting chlorophyll a/b binding protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P04778.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools