U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    transcriptional activator (DUF662) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818215, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    transcriptional activator (DUF662)
    Primary source
    TAIR:AT2G36410
    Locus tag
    AT2G36410
    See related
    Araport:AT2G36410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1O11.4; F1O11_4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (15278517..15280726)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene growth-regulating factor 3 Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene nucleolin-like protein Neighboring gene transmembrane protein, putative (DUF247)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001336597.1
    NM_129198.3
    NM_179934.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcriptional activator (DUF662)
    NP_001318363.1
    • Family of unknown function (DUF662); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G52920.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565846.1
    • Family of unknown function (DUF662); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G52920.1); Has 2751 Blast hits to 2501 proteins in 387 species: Archae - 87; Bacteria - 330; Metazoa - 1053; Fungi - 166; Plants - 353; Viruses - 20; Other Eukaryotes - 742 (source: NCBI BLink).
    NP_850265.1
    • Family of unknown function (DUF662); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G52920.2); Has 1971 Blast hits to 1842 proteins in 339 species: Archae - 58; Bacteria - 254; Metazoa - 781; Fungi - 127; Plants - 214; Viruses - 6; Other Eukaryotes - 531 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15278517..15280726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179934.2 → NP_850265.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850265.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVX8, Q3EBM1, Q8LCV2
      Conserved Domains (1) summary
      pfam04949
      Location:41 → 191
      Transcrip_act; Transcriptional activator

    2. NM_129198.3 → NP_565846.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565846.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VU90, Q8LCV2, Q9SJR4
      Conserved Domains (1) summary
      pfam04949
      Location:41 → 194
      Transcrip_act; Transcriptional activator

    3. NM_001336597.1 → NP_001318363.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2V422
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.