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    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844209, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
    Primary source
    TAIR:AT1G78730
    Locus tag
    AT1G78730
    See related
    Araport:AT1G78730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9K20.23; F9K20_23
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (29607689..29609441, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene BES1/BZR1 homolog 4 Neighboring gene TRICHOME BIREFRINGENCE-LIKE 42 Neighboring gene SecY protein transport family protein Neighboring gene RNI-like superfamily protein Neighboring gene F-box/RNI-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_106520.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
    NP_177994.2
    • FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G69630.1); Has 1701 Blast hits to 1666 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 1695; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29607689..29609441 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106520.3 → NP_177994.2  FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177994.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IBU3, Q0WU87, Q9ZV91
      UniProtKB/TrEMBL
      A0A5S9WVM7, A0A654ERS4
      Conserved Domains (4) summary
      smart00579
      Location:348 → 420
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:132 → 151
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:151 → 176
      LRR_2; Leucine Rich Repeat
      pfam00646
      Location:22 → 62
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZV91.2

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