U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GATL3 galacturonosyltransferase-like 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837885, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    GATL3
    Official Full Name
    galacturonosyltransferase-like 3
    Primary source
    TAIR:AT1G13250
    Locus tag
    AT1G13250
    See related
    Araport:AT1G13250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    galacturonosyltransferase-like 3; T6J4.1; T6J4_1
    Summary
    Encodes a protein with putative galacturonosyltransferase activity.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GATL3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (4528485..4530222, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ROTUNDIFOLIA like 17 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Molecular analysis of a family of Arabidopsis genes related to galacturonosyltransferases. Kong Y, et al. Plant Physiol, 2011 Apr. PMID 21300919, Free PMC Article
    2. Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase. Sterling JD, et al. Proc Natl Acad Sci U S A, 2006 Mar 28. PMID 16540543, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_101196.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables polygalacturonate 4-alpha-galacturonosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pectin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    galacturonosyltransferase-like 3
    NP_563925.1
    • galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4528485..4530222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101196.3 → NP_563925.1  galacturonosyltransferase-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563925.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0V7R1, Q8GW28, Q8LFL7, Q9FX71
      UniProtKB/TrEMBL
      A0A178W9M5, A0A384LEW6, W8Q3T2
      Conserved Domains (1) summary
      pfam01501
      Location:61 → 319
      Glyco_transf_8; Glycosyl transferase family 8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0V7R1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools