alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: alpha/beta-Hydrolases superfamily protein
Primary source: TAIR:AT4G17480
Locus tag: AT4G17480
See related: Araport:AT4G17480
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: DL4775C; FCAALL.380
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 8

Sequence:: Chromosome: 4; NC_003075.7 (9744913..9747104, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

Orthologs from OrthoDB

NM_001341226.1

Supported by ESTs:

NM_001341227.1

Supported by ESTs:

NM_001341228.1

Supported by ESTs:

NM_117851.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables palmitoyl hydrolase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: alpha/beta-Hydrolases superfamily protein

NP_193478.1

alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G17470.3); Has 618 Blast hits to 614 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 94; Plants - 140; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

9744913..9747104 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_117851.3 → NP_193478.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_193478.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9XU10, A0A654FQ80, Q84JI7

Conserved Domains (1) summary

PLN02606
Location:1 → 301

PLN02606; palmitoyl-protein thioesterase
NM_001341226.1 → NP_001328704.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B5G7, A0A654FQ80

Conserved Domains (1) summary

cl21494
Location:5 → 246

Abhydrolase; alpha/beta hydrolases
NM_001341227.1 → NP_001328703.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B5F9
NM_001341228.1 → NP_001328702.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B5G6, A0A654FQ80