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    Ssmem1 serine-rich single-pass membrane protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500068, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ssmem1provided by RGD
    Official Full Name
    serine-rich single-pass membrane protein 1provided by RGD
    Primary source
    RGD:1559502
    See related
    EnsemblRapid:ENSRNOG00000010345 AllianceGenome:RGD:1559502
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559502
    Summary
    Orthologous to human SSMEM1 (serine rich single-pass membrane protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 341.7) and Heart (RPKM 9.9) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ssmem1 in Genome Data Viewer
    Location:
    4q22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (60096133..60106429)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (59128730..59139029)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (57823411..57833706)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486570 Neighboring gene uncharacterized LOC108350685 Neighboring gene transmembrane protein 209 Neighboring gene uncharacterized LOC120102251 Neighboring gene carboxypeptidase A2 Neighboring gene carboxypeptidase A4 Neighboring gene uncharacterized LOC102553416

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    serine-rich single-pass membrane protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109228.3 → NP_001102698.1  serine-rich single-pass membrane protein 1 isoform 2

      See identical proteins and their annotated locations for NP_001102698.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A0G2K8A0, A6IEG5, D3ZDF5
      Related
      ENSRNOP00000036034.4, ENSRNOT00000030462.7
      Conserved Domains (1) summary
      pfam15468
      Location:1 → 196
      DUF4636; Domain of unknown function (DUF4636)

    2. NM_001398910.2 → NP_001385839.1  serine-rich single-pass membrane protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I5ZUI6, A6IEG6
      Related
      ENSRNOP00000081177.1, ENSRNOT00000093932.2
      Conserved Domains (1) summary
      pfam15468
      Location:1 → 244
      DUF4636; Domain of unknown function (DUF4636)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      60096133..60106429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063286501.1 → XP_063142571.1  serine-rich single-pass membrane protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K8A0

    2. XM_039108119.2 → XP_038964047.1  serine-rich single-pass membrane protein 1 isoform X1

      Conserved Domains (1) summary
      pfam15468
      Location:50 → 213
      DUF4636; Domain of unknown function (DUF4636)
    Nucleotide Protein Strain
    Heading Accession and Version

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