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    Btf3l4 basic transcription factor 3-like 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 366434, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Btf3l4provided by RGD
    Official Full Name
    basic transcription factor 3-like 4provided by RGD
    Primary source
    RGD:1311774
    See related
    EnsemblRapid:ENSRNOG00000008512 AllianceGenome:RGD:1311774
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311774
    Summary
    Orthologous to human BTF3L4 (basic transcription factor 3 like 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 216.9), Liver (RPKM 184.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Btf3l4 in Genome Data Viewer
    Location:
    5q34
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (128796594..128816219, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (123567902..123587527, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (128432049..128450530, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene coiled-coil and C2 domain containing 1B Neighboring gene zinc finger FYVE-type containing 9 Neighboring gene ribosomal protein L9, pseudogene 8 Neighboring gene thioredoxin domain containing 12 Neighboring gene KTI12 chromatin associated Neighboring gene RAB3B, member RAS oncogene family Neighboring gene uncharacterized LOC134486965

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The sclerostin-bone protein interactome. Devarajan-Ketha H, et al. Biochem Biophys Res Commun, 2012 Jan 13. PMID 22206666, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    transcription factor BTF3 homolog 4
    Names
    Btf3l4 protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399000.1 → NP_001385929.1  transcription factor BTF3 homolog 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A0G2K4W2, A6JYW3, D4A3I4
      Related
      ENSRNOP00000108853.1, ENSRNOT00000135795.1
      Conserved Domains (1) summary
      cd22055
      Location:4 → 120
      NAC_BTF3; basal transcription factor BTF3

    2. NM_001399001.1 → NP_001385930.1  transcription factor BTF3 homolog 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A0G2K4W2, A6JYW3, D4A3I4
      Related
      ENSRNOP00000011272.5, ENSRNOT00000011272.9
      Conserved Domains (1) summary
      cd22055
      Location:4 → 120
      NAC_BTF3; basal transcription factor BTF3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      128796594..128816219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288112.1 → XP_063144182.1  transcription factor BTF3 homolog 4 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K4W2

    2. XM_063288111.1 → XP_063144181.1  transcription factor BTF3 homolog 4 isoform X1

    3. XM_039111512.2 → XP_038967440.1  transcription factor BTF3 homolog 4 isoform X3

      UniProtKB/TrEMBL
      A0A0G2K4W2, A6JYW3, D4A3I4
      Conserved Domains (1) summary
      cd22055
      Location:4 → 120
      NAC_BTF3; basal transcription factor BTF3
    Nucleotide Protein Strain
    Heading Accession and Version

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