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    Cimap1d CIMAP1 family member D [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299600, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cimap1dprovided by RGD
    Official Full Name
    CIMAP1 family member Dprovided by RGD
    Primary source
    RGD:1310260
    See related
    EnsemblRapid:ENSRNOG00000008199 AllianceGenome:RGD:1310260
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Odf3l2; RGD1310260
    Summary
    Predicted to be active in cytoplasmic microtubule. Orthologous to human CIMAP1D (CIMAP1 family member D). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 14.7) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cimap1d in Genome Data Viewer
    Location:
    7q11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (10700067..10715742)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (10049472..10065626)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (12941994..12946981)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene tubulin polyglutamylase complex subunit 1 Neighboring gene mucosal vascular addressin cell adhesion molecule 1 Neighboring gene SHC adaptor protein 2 Neighboring gene C2 calcium-dependent domain containing 4C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. MTR120/KIAA1383, a novel microtubule-associated protein, promotes microtubule stability and ensures cytokinesis. Fong KW, et al. J Cell Sci, 2013 Feb 1. PMID 23264731, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytoplasmic microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasmic microtubule ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein CIMAP1D
    Names
    outer dense fiber of sperm tails 3-like 2
    outer dense fiber protein 3-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191777.1 → NP_001178706.1  protein CIMAP1D

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      D3ZJC1
      Related
      ENSRNOP00000010832.3, ENSRNOT00000010832.5
      Conserved Domains (1) summary
      PHA03247
      Location:52 → 262
      PHA03247; large tegument protein UL36; Provisional

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      10700067..10715742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039078633.2 → XP_038934561.1  protein CIMAP1D isoform X1

      UniProtKB/TrEMBL
      A6K8Z5

    2. XM_063263163.1 → XP_063119233.1  protein CIMAP1D isoform X1

      UniProtKB/TrEMBL
      A6K8Z5
    Nucleotide Protein Strain
    Heading Accession and Version

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