Ptar1 protein prenyltransferase alpha subunit repeat containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ptar1provided by RGD
Official Full Name: protein prenyltransferase alpha subunit repeat containing 1provided by RGD
Primary source: RGD:708369
See related: AllianceGenome:RGD:708369
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable protein prenyltransferase activity. Predicted to contribute to Rab geranylgeranyltransferase activity. Predicted to be involved in protein prenylation. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human PTAR1 (protein prenyltransferase alpha subunit repeat containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Lung (RPKM 178.7), Thymus (RPKM 153.0) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q51

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (230709731..230753380)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (221283306..221326861)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (241501679..241557651)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
contributes_to Rab geranylgeranyltransferase activity	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info	PubMed

General protein information

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Preferred Names: protein prenyltransferase alpha subunit repeat-containing protein 1

Names: GABAC receptor subunit (Rho2)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001105760.2 → NP_001099230.2 protein prenyltransferase alpha subunit repeat-containing protein 1

See identical proteins and their annotated locations for NP_001099230.2

Status: PROVISIONAL

Source sequence(s)

CH473953

UniProtKB/TrEMBL

A6I0N9, D3ZWG9

Conserved Domains (2) summary

PLN02789
Location:82 → 346

PLN02789; farnesyltranstransferase

pfam01239
Location:180 → 207

PPTA; Protein prenyltransferase alpha subunit repeat