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    si:dkey-164f24.2 si:dkey-164f24.2 [ Danio rerio (zebrafish) ]

    Gene ID: 566607, updated on 17-Sep-2024

    Summary

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    Official Symbol
    si:dkey-164f24.2provided by ZNC
    Official Full Name
    si:dkey-164f24.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7035
    See related
    Ensembl:ENSDARG00000089418 AllianceGenome:ZFIN:ZDB-GENE-030131-7035
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fk66f10; wu:fk66f10
    Orthologs
    all
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    Genomic context

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    See si:dkey-164f24.2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (32482744..32497823, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (32473512..32488609, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor F5-like Neighboring gene epithelial mitogen homolog (mouse) Neighboring gene uncharacterized LOC137496365 Neighboring gene Rieske domain-containing protein Neighboring gene neuronal calcium sensor 1b Neighboring gene uncharacterized LOC101882414

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Genomic and physiological analyses of the zebrafish atrioventricular canal reveal molecular building blocks of the secondary pacemaker region. Abu Nahia K, et al. Cell Mol Life Sci, 2021 Oct. PMID 34557935, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC566607

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386315.1 → NP_001373244.1  uncharacterized protein LOC566607

      Status: VALIDATED

      Source sequence(s)
      BC154804, BX545917, BX548021, DN857445
      UniProtKB/TrEMBL
      A0A286Y8V3, A0A8M2BEM4
      Related
      ENSDARP00000143587.1, ENSDART00000176298.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      32482744..32497823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167194.5 → XP_005167251.1  uncharacterized protein LOC566607 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BEI7, E7F7M1
      Related
      ENSDARP00000110777.1, ENSDART00000122359.3
      Conserved Domains (1) summary
      PRK10811
      Location:134 → 303
      rne; ribonuclease E; Reviewed
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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