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    zgc:66484 zgc:66484 [ Danio rerio (zebrafish) ]

    Gene ID: 327557, updated on 4-Jan-2025

    Summary

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    Official Symbol
    zgc:66484provided by ZNC
    Official Full Name
    zgc:66484provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5768
    See related
    Ensembl:ENSDARG00000030478 AllianceGenome:ZFIN:ZDB-GENE-030131-5768
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi17d03; wu:fi17d03
    Summary
    Predicted to enable oxidoreductase activity. Is expressed in gut; intestinal bulb; and pharynx. [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See zgc:66484 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (44899419..44905867, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (45098467..45108068, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496433 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 10 Neighboring gene villin 1 Neighboring gene integrin, beta 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC327557

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199827.1 → NP_956121.1  uncharacterized protein LOC327557

      See identical proteins and their annotated locations for NP_956121.1

      Status: PREDICTED

      Source sequence(s)
      BC055676
      UniProtKB/TrEMBL
      Q7SXB2
      Related
      ENSDARP00000115345.1, ENSDART00000138316.2
      Conserved Domains (1) summary
      PLN02568
      Location:50 → 404
      PLN02568; polyamine oxidase

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      44899419..44905867 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167919.5 → XP_005167976.1  uncharacterized protein LOC327557 isoform X2

      UniProtKB/TrEMBL
      A0A286YAP2, A0A8M2BFC4, F1Q7C3
      Related
      ENSDARP00000133718.1, ENSDART00000159337.2
      Conserved Domains (2) summary
      PLN02568
      Location:8 → 493
      PLN02568; polyamine oxidase
      pfam13450
      Location:12 → 72
      NAD_binding_8; NAD(P)-binding Rossmann-like domain

    2. XM_005167917.5 → XP_005167974.1  uncharacterized protein LOC327557 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BG04
      Conserved Domains (2) summary
      PLN02568
      Location:37 → 522
      PLN02568; polyamine oxidase
      pfam13450
      Location:41 → 101
      NAD_binding_8; NAD(P)-binding Rossmann-like domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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