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    zpax4 zona pellucida protein AX 4 [ Danio rerio (zebrafish) ]

    Gene ID: 798996, updated on 12-Sep-2024

    Summary

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    Official Symbol
    zpax4provided by ZNC
    Official Full Name
    zona pellucida protein AX 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6199
    See related
    Ensembl:ENSDARG00000079034 AllianceGenome:ZFIN:ZDB-GENE-030131-6199
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi33e12; fi38e01; wu:fi33e12; wu:fi38e01; si:dkey-19b23.11
    Orthologs
    all
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    Genomic context

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    See zpax4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (20577694..20582851, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (20325726..20330883, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene zgc:158423 Neighboring gene uncharacterized LOC108190658 Neighboring gene si:dkey-19b23.10 Neighboring gene si:dkey-19b23.7 Neighboring gene si:dkey-19b23.8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Bioinformatic analyses of zona pellucida genes in vertebrates and their expression in Nile tilapia. Wu T, et al. Fish Physiol Biochem, 2018 Apr. PMID 29307115
    2. Detection of biomarkers to differentiate endocrine disruption from hepatotoxicity in zebrafish (Danio rerio) using proteomics. Ayobahan SU, et al. Chemosphere, 2020 Feb. PMID 31726584
    3. Translation repression by maternal RNA binding protein Zar1 is essential for early oogenesis in zebrafish. Miao L, et al. Development, 2017 Jan 1. PMID 27913641
    4. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    zona pellucida protein AX 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001204179.1 → NP_001191108.1  zona pellucida protein AX 4 precursor

      Status: VALIDATED

      Source sequence(s)
      BI843123, BM775738, EG577874, EG586235, EV604559
      UniProtKB/TrEMBL
      A0A8M1NYL5, F1R4N4
      Related
      ENSDARP00000099884.2, ENSDART00000111719.4
      Conserved Domains (1) summary
      smart00241
      Location:643 → 725
      ZP; Zona pellucida (ZP) domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      20577694..20582851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394685.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      189152..194309 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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