slc20a1b solute carrier family 20 member 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc20a1bprovided by ZNC
Official Full Name: solute carrier family 20 member 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-260
See related: Ensembl:ENSDARG00000010641 AllianceGenome:ZFIN:ZDB-GENE-030131-260
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb104; fa05g12; slc20a1; sb:cb104; wu:fa05g12; wu:fb18f05
Summary: Predicted to enable phosphate transmembrane transporter activity. Predicted to be involved in phosphate ion transmembrane transport. Predicted to act upstream of or within phosphate ion transport. Predicted to be located in membrane. Is expressed in central nervous system; post-vent region; and somite. Orthologous to human SLC20A1 (solute carrier family 20 member 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (17713141..17728168)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (17755699..17770731)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

embryonic expression pattern of SLC20A1; SLC20A1 is transcribed from mid-somitogenesis in the anterior part of the pronephros where its expression corresponds to the rostral portion of the expression of other proximal tubule-specific markers
Title: The Na+/PO4 cotransporter SLC20A1 gene labels distinct restricted subdomains of the developing pronephros in Xenopus and zebrafish embryos.

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General gene information

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Markers

fb18f05.x1 (e-PCR)
- UniSTS:203014

fl01c02.x1 (e-PCR)
- UniSTS:201841

aa494987 (e-PCR)
- UniSTS:186845

fl10d05.x1 (e-PCR)
- UniSTS:201968

AI522344 (e-PCR)
- UniSTS:206324

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables phosphate transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables phosphate transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables symporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in phosphate ion transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within phosphate ion transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: sodium-dependent phosphate transporter 1-B

Names: solute carrier family 20 (phosphate transporter), member 1; solute carrier family 20 (phosphate transporter), member 1b; solute carrier family 20 member 1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212588.1 → NP_997753.1 sodium-dependent phosphate transporter 1-B

See identical proteins and their annotated locations for NP_997753.1

Status: PROVISIONAL

Source sequence(s)

BC057497

UniProtKB/Swiss-Prot

Q6PFM1

Related

ENSDARP00000039968.5, ENSDART00000039969.6

Conserved Domains (3) summary

COG0306
Location:495 → 664

PitA; Phosphate/sulfate permease [Inorganic ion transport and metabolism]

pfam01384
Location:554 → 652

PHO4; Phosphate transporter family

cl19579
Location:123 → 268

Peptidase_U4; Sporulation factor SpoIIGA

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007121.7 Reference GRCz11 Primary Assembly

Range

17713141..17728168

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005155625.5 → XP_005155682.1 sodium-dependent phosphate transporter 1-B isoform X1

UniProtKB/TrEMBL

A0A8M2B256, F1QI67

Related

ENSDARP00000132596.1, ENSDART00000170453.3

Conserved Domains (3) summary

COG0306
Location:495 → 660

PitA; Phosphate/sulfate permease [Inorganic ion transport and metabolism]

pfam01384
Location:554 → 652

PHO4; Phosphate transporter family

cl19579
Location:123 → 268

Peptidase_U4; Sporulation factor SpoIIGA