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    LOC567883 NOD-like receptor C [ Danio rerio (zebrafish) ]

    Gene ID: 567883, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC567883
    Gene description
    NOD-like receptor C
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC567883 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003336534.1 (31412..87445)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003336534.1 (56256..87448)

    NW_003336534.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 5A Neighboring gene ubiquitin specific peptidase 15 Neighboring gene ribonuclease inhibitor-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish. Laing KJ, et al. BMC Evol Biol, 2008 Feb 6. PMID 18254971, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    NACHT, LRR and PYD domains-containing protein 12; NACHT, LRR and PYD domains-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_003336534.1 Reference GRCz11 Primary Assembly

      Range
      31412..87445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068217773.1 → XP_068073874.1  NACHT, LRR and PYD domains-containing protein 3 isoform X1

    2. XM_068217772.1 → XP_068073873.1  NACHT, LRR and PYD domains-containing protein 3 isoform X1

    3. XM_017354459.2 → XP_017209948.2  NACHT, LRR and PYD domains-containing protein 12 isoform X2

    4. XM_068217775.1 → XP_068073876.1  NACHT, LRR and PYD domains-containing protein 3 isoform X3

    5. XM_068217774.1 → XP_068073875.1  NACHT, LRR and PYD domains-containing protein 3 isoform X1

    6. XM_068217776.1 → XP_068073877.1  NACHT, LRR and PYD domains-containing protein 3 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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