si:ch211-105c13.3 si:ch211-105c13.3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-105c13.3provided by ZNC
Official Full Name: si:ch211-105c13.3provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-4483
See related: Ensembl:ENSDARG00000089441 AllianceGenome:ZFIN:ZDB-GENE-030131-4483
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fd10a10; wu:fd10a10
Summary: Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in extracellular space and perinuclear region of cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:ch211-105c13.3 in Genome Data Viewer

Location:: chromosome: 16

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (22695204..22713192, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (22779814..22797802, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fd10a03.x1 (e-PCR)
- UniSTS:195091

fb04c04.y1 (e-PCR)
- UniSTS:189855

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables calcium ion binding	IBA Inferred from Biological aspect of Ancestor more info
enables calcium ion binding	IEA Inferred from Electronic Annotation more info
enables calcium-dependent protein binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info
is_active_in perinuclear region of cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC325758

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001326482.1 → NP_001313411.1 uncharacterized protein LOC325758

Status: VALIDATED

Source sequence(s)

BX950871, EH434382, EH436228, EH469180

UniProtKB/TrEMBL

A0A8M1P3D8, E7FAE7

Related

ENSDARP00000122681.1, ENSDART00000143836.3

Conserved Domains (2) summary

pfam13499
Location:27 → 72

EF-hand_7; EF-hand domain pair

cl08302
Location:1 → 84

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...