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    tsnaxip1 translin-associated factor X interacting protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 565917, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tsnaxip1provided by ZNC
    Official Full Name
    translin-associated factor X interacting protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070424-39
    See related
    Ensembl:ENSDARG00000030512 AllianceGenome:ZFIN:ZDB-GENE-070424-39
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fc26b06; zgc:162756
    Summary
    Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tsnaxip1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (21931733..21950765, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (21942667..21961685, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene neuritin 1-like a Neighboring gene enhancer of mRNA decapping 4 Neighboring gene nuclear transport factor 2 Neighboring gene RAN binding protein 10 Neighboring gene par-6 family cell polarity regulator alpha Neighboring gene uncharacterized LOC100320750

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine. Webb KJ, et al. Genome Biol, 2009. PMID 19646228, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    translin-associated factor X-interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100100.1 → NP_001093570.1  translin-associated factor X-interacting protein 1

      Status: PROVISIONAL

      Source sequence(s)
      CT025923
      UniProtKB/TrEMBL
      A0A8M1NFA9, A5WVR3
      Related
      ENSDARP00000043451.7, ENSDART00000043452.8
      Conserved Domains (1) summary
      pfam15739
      Location:89 → 192
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      21931733..21950765 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214808.1 → XP_068070909.1  translin-associated factor X-interacting protein 1 isoform X2

    2. XM_009293577.3 → XP_009291852.1  translin-associated factor X-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B2V9
      Conserved Domains (1) summary
      pfam15739
      Location:88 → 191
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    3. XM_068214809.1 → XP_068070910.1  translin-associated factor X-interacting protein 1 isoform X3

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395341.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      302202..331847 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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