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    palm3 paralemmin 3 [ Danio rerio (zebrafish) ]

    Gene ID: 790940, updated on 9-Dec-2024

    Summary

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    Official Symbol
    palm3provided by ZNC
    Official Full Name
    paralemmin 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061215-74
    See related
    Ensembl:ENSDARG00000071215 AllianceGenome:ZFIN:ZDB-GENE-061215-74
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:158252
    Summary
    Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Orthologous to human PALM3 (paralemmin 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See palm3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (7977596..8075517)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (7742072..7839978)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene myosin, heavy chain 9a, non-muscle Neighboring gene phospholipid phosphatase related 2b Neighboring gene uncharacterized LOC137495917 Neighboring gene MISP family member 3 Neighboring gene Kruppel like factor 1 (erythroid)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of the vertebrate paralemmin gene family: ancient origin of gene duplicates suggests distinct functions. Hultqvist G, et al. PLoS One, 2012. PMID 22855693, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    paralemmin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080085.1 → NP_001073554.1  paralemmin-3

      See identical proteins and their annotated locations for NP_001073554.1

      Status: PREDICTED

      Source sequence(s)
      BC128825
      UniProtKB/TrEMBL
      A1A5V2
      Related
      ENSDARP00000101116.2, ENSDART00000112290.4
      Conserved Domains (1) summary
      pfam03879
      Location:2 → 54
      Cgr1; Cgr1 family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      7977596..8075517
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476937.2 → XP_021332612.1  paralemmin-3 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PMA1
      Conserved Domains (1) summary
      pfam03879
      Location:2 → 54
      Cgr1; Cgr1 family
    Nucleotide Protein Strain
    Heading Accession and Version

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