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    slc7a7 solute carrier family 7 member 7 [ Danio rerio (zebrafish) ]

    Gene ID: 641560, updated on 9-Dec-2024

    Summary

    Official Symbol
    slc7a7provided by ZNC
    Official Full Name
    solute carrier family 7 member 7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-051127-5
    See related
    Ensembl:ENSDARG00000055226 AllianceGenome:ZFIN:ZDB-GENE-051127-5
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:123300
    Summary
    Predicted to enable L-amino acid transmembrane transporter activity and basic amino acid transmembrane transporter activity. Acts upstream of or within microglia development. Predicted to be located in membrane. Is expressed in brain; myeloid cell; and pancreatic D cell. Used to study lysinuric protein intolerance. Human ortholog(s) of this gene implicated in lysinuric protein intolerance. Orthologous to human SLC7A7 (solute carrier family 7 member 7). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See slc7a7 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (19562043..19587546)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (19310089..19335574)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene cyclin B1 interacting protein 1 Neighboring gene si:ch211-212k18.5 Neighboring gene OXA1L mitochondrial inner membrane protein Neighboring gene caspase 23, apoptosis-related cysteine peptidase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC123300

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables L-amino acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables basic amino acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within microglia development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of arginine metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Y+L amino acid transporter 1
    Names
    solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
    solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
    unm t30713
    unm_t30713

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037559.2NP_001032648.2  Y+L amino acid transporter 1

      Status: VALIDATED

      Source sequence(s)
      CR352328
      UniProtKB/TrEMBL
      Q2YDQ4
      Related
      ENSDARP00000072012.4, ENSDART00000077545.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      19562043..19587546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068222402.1XP_068078503.1  Y+L amino acid transporter 1 isoform X1

      UniProtKB/TrEMBL
      Q2YDQ4

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394683.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      284264..309749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)