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    phrf1 PHD and ring finger domains 1 [ Danio rerio (zebrafish) ]

    Gene ID: 321905, updated on 9-Dec-2024

    Summary

    Official Symbol
    phrf1provided by ZNC
    Official Full Name
    PHD and ring finger domains 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-624
    See related
    Ensembl:ENSDARG00000075252 AllianceGenome:ZFIN:ZDB-GENE-030131-624
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb38b02; fc78a10; wu:fb38b02; wu:fc78a10; zgc:172184
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human PHRF1 (PHD and ring finger domains 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See phrf1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (25508492..25546186)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (25413407..25450897)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 7a Neighboring gene uncharacterized LOC137489363 Neighboring gene microRNA 210 Neighboring gene interferon regulatory factor 7 Neighboring gene hypermethylated in cancer 1 like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    PHD and RING finger domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      25508492..25546186
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005163099.5XP_005163156.1  PHD and RING finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BA76
      Related
      ENSDARP00000125217.1, ENSDART00000150719.3
      Conserved Domains (2) summary
      cd15536
      Location:187231
      PHD_PHRF1; PHD finger found in PHD and RING finger domain-containing protein 1 (PHRF1)
      pfam13639
      Location:104145
      zf-RING_2; Ring finger domain
    2. XM_002666868.6XP_002666914.2  PHD and RING finger domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M1RI60
      Conserved Domains (2) summary
      cd15536
      Location:187231
      PHD_PHRF1; PHD finger found in PHD and RING finger domain-containing protein 1 (PHRF1)
      pfam13639
      Location:104145
      zf-RING_2; Ring finger domain
    3. XM_068217540.1XP_068073641.1  PHD and RING finger domain-containing protein 1 isoform X3

    4. XM_068217541.1XP_068073642.1  PHD and RING finger domain-containing protein 1 isoform X4

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001114882.1: Suppressed sequence

      Description
      NM_001114882.1: This RefSeq was temporarily suppressed because the CDS was partial.