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    ntng1a netrin g1a [ Danio rerio (zebrafish) ]

    Gene ID: 569075, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ntng1aprovided by ZNC
    Official Full Name
    netrin g1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091118-13
    See related
    Ensembl:ENSDARG00000014973 AllianceGenome:ZFIN:ZDB-GENE-091118-13
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ntng1; si:ch211-223f21.1
    Summary
    Predicted to be involved in animal organ morphogenesis; axonogenesis; and tissue development. Orthologous to human NTNG1 (netrin G1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ntng1a in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (29362323..29526561)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (29461696..29538500)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489291 Neighboring gene protein arginine methyltransferase 6 Neighboring gene vav guanine nucleotide exchange factor 3 Neighboring gene uncharacterized LOC101885749 Neighboring gene zgc:163022

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Rab11 promotes single Mauthner cell axon regeneration in vivo through axon guidance molecule Ntng2b. Yao H, et al. Exp Neurol, 2024 Apr. PMID 38325655
    2. Divergence of regulatory sequences in duplicated fish genes. Hellemont RV, et al. Genome Dyn, 2007. PMID 18753786
    3. Role of neurexin2a in lead-induced locomotor defect in developing zebrafish. Tu H, et al. Aquat Toxicol, 2018 Jan. PMID 29195096
    4. Expression of Protein-Coding Gene Orthologs in Zebrafish and Mouse Inner Ear Non-sensory Supporting Cells. Giffen KP, et al. Front Neurosci, 2019. PMID 31680844, Free PMC Article
    5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    netrin-G1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      29362323..29526561
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470354.2 → XP_021326029.1  netrin-G1 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B6S1
      Conserved Domains (3) summary
      cd00054
      Location:475 → 499
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:421 → 468
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    2. XM_009297530.4 → XP_009295805.2  netrin-G1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3APC3
      Conserved Domains (3) summary
      cd00054
      Location:454 → 478
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:400 → 447
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    3. XM_009297533.4 → XP_009295808.2  netrin-G1 isoform X9

      UniProtKB/TrEMBL
      A0A8M3ANP5
      Conserved Domains (3) summary
      cd00054
      Location:409 → 433
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:297 → 343
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    4. XM_009297531.4 → XP_009295806.2  netrin-G1 isoform X3

      UniProtKB/TrEMBL
      A0A8M3AZ83
      Conserved Domains (3) summary
      cd00054
      Location:453 → 477
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:399 → 446
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    5. XM_009297534.4 → XP_009295809.2  netrin-G1 isoform X10

      UniProtKB/TrEMBL
      A0A8M3B6S5
      Conserved Domains (3) summary
      cd00054
      Location:408 → 432
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:297 → 343
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    6. XM_021470356.2 → XP_021326031.1  netrin-G1 isoform X6

      UniProtKB/TrEMBL
      A0A8M9PUJ1
      Related
      ENSDARP00000145618.1, ENSDART00000193556.1
      Conserved Domains (3) summary
      cd00054
      Location:434 → 458
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:380 → 427
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    7. XM_009297537.4 → XP_009295812.2  netrin-G1 isoform X13

      UniProtKB/TrEMBL
      A0A8M3AW50
      Related
      ENSDARP00000152072.1, ENSDART00000188414.1
      Conserved Domains (3) summary
      cd00054
      Location:389 → 413
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:297 → 343
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    8. XM_009297532.4 → XP_009295807.2  netrin-G1 isoform X4

      UniProtKB/TrEMBL
      A0A8M3AW46
      Conserved Domains (3) summary
      cd00054
      Location:439 → 463
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:385 → 432
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    9. XM_009297535.4 → XP_009295810.2  netrin-G1 isoform X11

      UniProtKB/TrEMBL
      A0A8M3APC6
      Conserved Domains (3) summary
      cd00054
      Location:394 → 418
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:297 → 343
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    10. XM_017353916.3 → XP_017209405.2  netrin-G1 isoform X5

      UniProtKB/TrEMBL
      A0A8M6YVP9
      Conserved Domains (3) summary
      cd00054
      Location:438 → 462
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:384 → 431
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    11. XM_009297536.4 → XP_009295811.2  netrin-G1 isoform X12

      UniProtKB/TrEMBL
      A0A8M3AZ87
      Conserved Domains (3) summary
      cd00054
      Location:393 → 417
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:297 → 343
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    12. XM_009297529.4 → XP_009295804.2  netrin-G1 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B6S1
      Conserved Domains (3) summary
      cd00054
      Location:475 → 499
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:421 → 468
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    13. XM_017353915.3 → XP_017209404.2  netrin-G1 isoform X7

      UniProtKB/TrEMBL
      A0A8M6Z4S4
      Conserved Domains (3) summary
      cd00054
      Location:430 → 454
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:297 → 343
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    14. XM_021470357.2 → XP_021326032.1  netrin-G1 isoform X8

      UniProtKB/TrEMBL
      A0A8M9P669
      Conserved Domains (3) summary
      cd00054
      Location:419 → 443
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:365 → 412
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    15. XM_021470358.2 → XP_021326033.1  netrin-G1 isoform X14

      UniProtKB/TrEMBL
      A0A8M9PGG9
      Conserved Domains (3) summary
      cd00054
      Location:374 → 398
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:297 → 343
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)

    16. XM_021470355.2 → XP_021326030.1  netrin-G1 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B6S1
      Conserved Domains (3) summary
      cd00054
      Location:475 → 499
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:421 → 468
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:69 → 296
      Laminin_N; Laminin N-terminal (Domain VI)
    Nucleotide Protein
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