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    trappc8 trafficking protein particle complex subunit 8 [ Danio rerio (zebrafish) ]

    Gene ID: 570167, updated on 9-Dec-2024

    Summary

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    Official Symbol
    trappc8provided by ZNC
    Official Full Name
    trafficking protein particle complex subunit 8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-601
    See related
    Ensembl:ENSDARG00000038866 AllianceGenome:ZFIN:ZDB-GENE-130530-601
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human TRAPPC8 (trafficking protein particle complex subunit 8). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See trappc8 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (6307622..6476823, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (6263777..6487025, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene finTRIM family, member 63 Neighboring gene opsin 7, group member a Neighboring gene E3 ubiquitin-protein ligase RNF166 Neighboring gene meprin A subunit beta a Neighboring gene MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    part_of TRAPPIII protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    trafficking protein particle complex subunit 8
    Names
    trafficking protein particle complex 8
    zmp:0000000598

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      6307622..6476823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017352638.3 → XP_017208127.1  trafficking protein particle complex subunit 8 isoform X3

      UniProtKB/TrEMBL
      A0A8M6YUB1, A0A8M6Z2T8

    2. XM_017352637.3 → XP_017208126.1  trafficking protein particle complex subunit 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M6Z2T8, A0A8M6Z3E9

    3. XM_017352636.3 → XP_017208125.1  trafficking protein particle complex subunit 8 isoform X1

      UniProtKB/TrEMBL
      A0A8M6YWS5, A0A8M6Z2T8, E7FA12
      Related
      ENSDARP00000071563.4, ENSDART00000077095.6
    Nucleotide Protein Strain
    Heading Accession and Version

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