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    anapc13 anaphase promoting complex subunit 13 [ Danio rerio (zebrafish) ]

    Gene ID: 569473, updated on 9-Dec-2024

    Summary

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    Official Symbol
    anapc13provided by ZNC
    Official Full Name
    anaphase promoting complex subunit 13provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091204-298
    See related
    Ensembl:ENSDARG00000078435 AllianceGenome:ZFIN:ZDB-GENE-091204-298
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-269g4.3
    Summary
    Predicted to be involved in protein K11-linked ubiquitination. Predicted to act upstream of or within cell division. Predicted to be located in nucleus. Predicted to be part of anaphase-promoting complex. Orthologous to human ANAPC13 (anaphase promoting complex subunit 13). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See anapc13 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (24536240..24537061)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (24499635..24500456)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule 1a Neighboring gene uncharacterized LOC137488816 Neighboring gene Rho GTPase activating protein 32b Neighboring gene sterol-C5-desaturase Neighboring gene immunoglobulin superfamily, member 9Bb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein K11-linked ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of anaphase-promoting complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of anaphase-promoting complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    anaphase-promoting complex subunit 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001302785.1 → NP_001289714.1  anaphase-promoting complex subunit 13

      See identical proteins and their annotated locations for NP_001289714.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      CR759955, EH542322, EH556652
      UniProtKB/TrEMBL
      A0A8M1P146, E7FFM7
      Related
      ENSDARP00000123603.1, ENSDART00000145448.2
      Conserved Domains (1) summary
      pfam05839
      Location:1 → 73
      Apc13p; Apc13p protein

    2. NM_001302786.1 → NP_001289715.1  anaphase-promoting complex subunit 13

      See identical proteins and their annotated locations for NP_001289715.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      CR759955, EH556652
      UniProtKB/TrEMBL
      A0A8M1P146, E7FFM7
      Related
      ENSDARP00000097738.3, ENSDART00000109886.5
      Conserved Domains (1) summary
      pfam05839
      Location:1 → 73
      Apc13p; Apc13p protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      24536240..24537061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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