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    rusf1 RUS family member 1 [ Danio rerio (zebrafish) ]

    Gene ID: 555936, updated on 9-Dec-2024

    Summary

    Official Symbol
    rusf1provided by ZNC
    Official Full Name
    RUS family member 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070410-89
    See related
    Ensembl:ENSDARG00000059919 AllianceGenome:ZFIN:ZDB-GENE-070410-89
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:162613
    Summary
    Predicted to be located in membrane. Orthologous to human RUSF1 (RUS family member 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See rusf1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32862730..32870055)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32731017..32737519)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene CD2 (cytoplasmic tail) binding protein 2 Neighboring gene proline rich 14 Neighboring gene si:dkey-16l2.20 Neighboring gene zgc:113090 Neighboring gene K(lysine) acetyltransferase 7a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110453.2NP_001103923.2  RUS family member 1

      Status: VALIDATED

      Source sequence(s)
      BX571714
      UniProtKB/TrEMBL
      A3KNW8
      Related
      ENSDARP00000114281.1, ENSDART00000144939.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      32862730..32870055
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068217063.1XP_068073164.1  RUS family member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BBC2, A3KNW8, F1QF25
    2. XM_005164030.5XP_005164087.1  RUS family member 1 isoform X1

      See identical proteins and their annotated locations for XP_005164087.1

      UniProtKB/TrEMBL
      A0A8M2BBC2, A3KNW8, F1QF25
      Conserved Domains (1) summary
      pfam04884
      Location:43281
      DUF647; Vitamin B6 photo-protection and homoeostasis
    3. XM_005164032.5XP_005164089.1  RUS family member 1 isoform X1

      See identical proteins and their annotated locations for XP_005164089.1

      UniProtKB/TrEMBL
      A0A8M2BBC2, A3KNW8, F1QF25
      Conserved Domains (1) summary
      pfam04884
      Location:43281
      DUF647; Vitamin B6 photo-protection and homoeostasis
    4. XM_005164031.5XP_005164088.1  RUS family member 1 isoform X1

      See identical proteins and their annotated locations for XP_005164088.1

      UniProtKB/TrEMBL
      A0A8M2BBC2, A3KNW8, F1QF25
      Related
      ENSDARP00000104623.2, ENSDART00000125126.4
      Conserved Domains (1) summary
      pfam04884
      Location:43281
      DUF647; Vitamin B6 photo-protection and homoeostasis

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394535.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      343823..349762
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395227.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      223063..228976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)