U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zgc:154054 zgc:154054 [ Danio rerio (zebrafish) ]

    Gene ID: 777616, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:154054provided by ZNC
    Official Full Name
    zgc:154054provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061103-283
    See related
    Ensembl:ENSDARG00000099923 AllianceGenome:ZFIN:ZDB-GENE-061103-283
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be active in Golgi stack; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See zgc:154054 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (48862987..48921555)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (49875230..49933798)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 17b Neighboring gene saxitoxin and tetrodotoxin-binding protein 2 Neighboring gene si:dkeyp-121d2.7 Neighboring gene short coiled-coil protein b

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables acetylglucosaminyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi stack IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in endoplasmic reticulum-Golgi intermediate compartment IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077724.1NP_001071192.1  Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B-like precursor

      See identical proteins and their annotated locations for NP_001071192.1

      Status: PROVISIONAL

      Source sequence(s)
      BC125946
      UniProtKB/TrEMBL
      A0JMN5
      Related
      ENSDARP00000136371.1, ENSDART00000167810.3
      Conserved Domains (1) summary
      pfam04666
      Location:92369
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      48862987..48921555
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)