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    RBP47C RNA-binding protein 47C [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841157, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RBP47C
    Official Full Name
    RNA-binding protein 47C
    Primary source
    TAIR:AT1G47490
    Locus tag
    AT1G47490
    See related
    Araport:AT1G47490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRBP47C; F16N3.24; F16N3_24; RNA-binding protein 47C
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    Genomic context

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    See RBP47C in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (17424473..17427475)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene carboxy-terminally encoded peptide protein Neighboring gene uncharacterized protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. Lorković ZJ, et al. RNA, 2000 Nov. PMID 11105760, Free PMC Article
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_103642.3
    NM_202255.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables poly(A) binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to heat ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasmic stress granule ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 47C
    NP_175180.1
    • RNA-binding protein 47C (RBP47C); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47C' (TAIR:AT1G47500.1); Has 33065 Blast hits to 20848 proteins in 888 species: Archae - 16; Bacteria - 2226; Metazoa - 17066; Fungi - 3800; Plants - 6752; Viruses - 82; Other Eukaryotes - 3123 (source: NCBI BLink).
    NP_973984.1
    • RNA-binding protein 47C (RBP47C); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47C' (TAIR:AT1G47500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17424473..17427475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202255.2 → NP_973984.1  RNA-binding protein 47C [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973984.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SX79
      Conserved Domains (3) summary
      cd12344
      Location:102 → 184
      RRM1_SECp43_like; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:196 → 275
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cl23782
      Location:41 → 87
      RCR; Chitin synthesis regulation, resistance to Congo red

    2. NM_103642.3 → NP_175180.1  RNA-binding protein 47C [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175180.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HT91, Q9SX79
      UniProtKB/TrEMBL
      A0A178W4G6, A0A654EGH7
      Conserved Domains (2) summary
      TIGR01628
      Location:102 → 385
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12345
      Location:196 → 275
      RRM2_SECp43_like; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SX79.1

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