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    Concanavalin A-like lectin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 3768781, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Concanavalin A-like lectin family protein
    Primary source
    TAIR:AT3G09190
    Locus tag
    AT3G09190
    See related
    Araport:AT3G09190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3L24.6
    Summary
    Regulates flowering time in Ws ecotype.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (2821448..2822936, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene Ribosomal protein L10 family protein Neighboring gene plastid transcriptionally active 13 Neighboring gene laccase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis. Pouteau S, et al. Plant Physiol, 2008 Nov. PMID 18799658, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001161127.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Concanavalin A-like lectin family protein
    NP_001154599.1
    • Concanavalin A-like lectin family protein; FUNCTIONS IN: binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin family protein (TAIR:AT3G09035.1); Has 755 Blast hits to 752 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2821448..2822936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161127.2 → NP_001154599.1  Concanavalin A-like lectin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154599.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDH6, F4IZV1
      Conserved Domains (1) summary
      cl14058
      Location:23 → 258
      lectin_L-type; legume lectins
    Nucleotide Protein
    Heading Accession and Version

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