U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC02424 long intergenic non-protein coding RNA 2424 [ Homo sapiens (human) ]

    Gene ID: 105369860, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02424provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2424provided by HGNC
    Primary source
    HGNC:HGNC:53354
    See related
    Ensembl:ENSG00000258220 AllianceGenome:HGNC:53354
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.5) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC02424 in Genome Data Viewer
    Location:
    12q21.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (78326680..78359746, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (78305056..78338084, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (78720460..78753526, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902972 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:78038694-78039502 Neighboring gene NANOG hESC enhancer GRCh37_chr12:78039827-78040389 Neighboring gene Sharpr-MPRA regulatory region 9790 Neighboring gene Sharpr-MPRA regulatory region 15641 Neighboring gene neuron navigator 3 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:78282205-78283404 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:78333298-78334497 Neighboring gene NANOG hESC enhancer GRCh37_chr12:78375957-78376518 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:78495967-78496468 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:78496469-78496968 Neighboring gene peroxiredoxin like 2A pseudogene 1 Neighboring gene uncharacterized LOC105369859 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4679 Neighboring gene mitochondrial ribosomal protein L11 pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:79045498-79046127 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:79152976-79154175 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:79187167-79188366 Neighboring gene RAS like proto-oncogene A pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135021.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC045810
      Related
      ENST00000548512.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      78326680..78359746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      78305056..78338084 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)