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    RIP3 ROP interactive partner 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824503, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RIP3
    Official Full Name
    ROP interactive partner 4
    Primary source
    TAIR:AT3G53350
    Locus tag
    AT3G53350
    See related
    Araport:AT3G53350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Microtubule Depletion Domain 1; MIDD1; RIP4; ROP interactive partner 3; ROP interactive partner 4
    Summary
    Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.
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    Genomic context

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    See RIP3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (19779978..19782750, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit B10 Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Microtubule-associated phase separation of MIDD1 tunes cell wall spacing in xylem vessels in Arabidopsis thaliana. Higa T, et al. Nat Plants, 2024 Jan. PMID 38172572
    2. Rho of plant GTPase signaling regulates the behavior of Arabidopsis kinesin-13A to establish secondary cell wall patterns. Oda Y, et al. Plant Cell, 2013 Nov. PMID 24280391, Free PMC Article
    3. Initiation of cell wall pattern by a Rho- and microtubule-driven symmetry breaking. Oda Y, et al. Science, 2012 Sep 14. PMID 22984069
    4. RIP3 and AtKinesin-13A - a novel interaction linking Rho proteins of plants to microtubules. Mucha E, et al. Eur J Cell Biol, 2010 Dec. PMID 20832900
    5. RIP1 (ROP Interactive Partner 1)/ICR1 marks pollen germination sites and may act in the ROP1 pathway in the control of polarized pollen growth. Li S, et al. Mol Plant, 2008 Nov. PMID 19825600, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339612.1
    NM_001339613.1
    NM_001339614.1
    NM_001339615.1
    NM_001339616.1
    NM_001339617.1
    NM_115195.3
    NM_202694.2
    NM_202695.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cortical microtubule organization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within plant-type cell wall organization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    ROP interactive partner 4
    NP_190903.2
    • ROP interactive partner 4 (RIP4); INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ROP interactive partner 3 (TAIR:AT2G37080.1); Has 125494 Blast hits to 67286 proteins in 3149 species: Archae - 1620; Bacteria - 20566; Metazoa - 57605; Fungi - 11002; Plants - 6921; Viruses - 471; Other Eukaryotes - 27309 (source: NCBI BLink).
    NP_974423.1
    • ROP interactive partner 4 (RIP4); BEST Arabidopsis thaliana protein match is: ROP interactive partner 3 (TAIR:AT2G37080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974424.1
    • ROP interactive partner 4 (RIP4); BEST Arabidopsis thaliana protein match is: ROP interactive partner 3 (TAIR:AT2G37080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19779978..19782750 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115195.3 → NP_190903.2  ROP interactive partner 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190903.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYU8, Q9LFI2
      UniProtKB/TrEMBL
      A0A178VBU9, A0A5S9XKM5
      Conserved Domains (1) summary
      TIGR02168
      Location:69 → 379
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001339614.1 → NP_001326317.1  ROP interactive partner 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNW9, A0A5S9XKM5
      Conserved Domains (1) summary
      TIGR02168
      Location:80 → 390
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. NM_001339613.1 → NP_001326320.1  ROP interactive partner 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYU8, Q9LFI2
      UniProtKB/TrEMBL
      A0A178VBU9, A0A5S9XKM5
      Conserved Domains (1) summary
      TIGR02168
      Location:69 → 379
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. NM_001339612.1 → NP_001326319.1  ROP interactive partner 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNW9, A0A5S9XKM5
      Conserved Domains (1) summary
      TIGR02168
      Location:80 → 390
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    5. NM_001339615.1 → NP_001326318.1  ROP interactive partner 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYU8, Q9LFI2
      UniProtKB/TrEMBL
      A0A178VBU9, A0A5S9XKM5
      Conserved Domains (1) summary
      TIGR02168
      Location:69 → 379
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    6. NM_202694.2 → NP_974423.1  ROP interactive partner 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974423.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XKM5
      Conserved Domains (1) summary
      TIGR02168
      Location:67 → 377
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    7. NM_001339616.1 → NP_001326322.1  ROP interactive partner 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNX4, A0A5S9XKM5
      Conserved Domains (1) summary
      TIGR02168
      Location:78 → 388
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    8. NM_202695.1 → NP_974424.1  ROP interactive partner 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974424.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XKM5
      Conserved Domains (1) summary
      TIGR02168
      Location:67 → 377
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    9. NM_001339617.1 → NP_001326321.1  ROP interactive partner 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNX3, A0A5S9XKM5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYU8.2

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