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    CG17328 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34962, updated on 9-Dec-2024

    Summary

    Official Symbol
    CG17328provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0028895
    Locus tag
    Dmel_CG17328
    See related
    AllianceGenome:FB:FBgn0028895
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BG:DS02740.8; Dmel\CG17328; DS02740.8
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including anterior endoderm; anterior endoderm anlage; embryonic/larval midgut primordium; ganglia; and mesoderm. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See CG17328 in Genome Data Viewer
    Location:
    35F1-35F1; 2-52 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (16299943..16301765)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (16299943..16301765)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44899 Neighboring gene Cytochrome P450 303a1 Neighboring gene heixuedian Neighboring gene Glia maturation factor Neighboring gene crossover suppressor on 2 of Manheim Neighboring gene uncharacterized protein Neighboring gene Syntaxin 5

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transcription cis-regulatory region binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein
    Names
    CG17328-PA
    CG17328-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      16299943..16301765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001273565.1NP_001260494.1  uncharacterized protein Dmel_CG17328, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260494.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PD13
      Conserved Domains (4) summary
      COG5048
      Location:115180
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:118138
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam07776
      Location:1150
      zf-AD; Zinc-finger associated domain (zf-AD)
      pfam13465
      Location:158182
      zf-H2C2_2; Zinc-finger double domain
    2. NM_135942.4NP_609786.2  uncharacterized protein Dmel_CG17328, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609786.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VJL7
      Related
      FBpp0080387
      Conserved Domains (4) summary
      smart00868
      Location:880
      zf-AD; Zinc-finger associated domain (zf-AD)
      COG5048
      Location:146211
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:149169
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:189213
      zf-H2C2_2; Zinc-finger double domain