U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ribonuclease III family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841957, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Ribonuclease III family protein
    Primary source
    TAIR:AT1G55140
    Locus tag
    AT1G55140
    See related
    Araport:AT1G55140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7N22.8; T7N22_8
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (20572405..20574382, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene indeterminate(ID)-domain 7 Neighboring gene beta-fructofuranosidase 5 Neighboring gene Endomembrane protein 70 protein family Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene WAS/WASL-interacting family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis chloroplast mini-ribonuclease III participates in rRNA maturation and intron recycling. Hotto AM, et al. Plant Cell, 2015 Mar. PMID 25724636, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RNC3 and RNC4, two Arabidopsis thaliana chloroplast Mini-RNase III-like enzymes participates in rRNA maturation and intron recycling. [RNC3]
      Title: Arabidopsis chloroplast mini-ribonuclease III participates in rRNA maturation and intron recycling.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_001084252.1
    NM_104387.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ribonuclease III activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within RNA processing IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within maturation of 4.5S rRNA IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within rRNA 5'-end processing IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Ribonuclease III family protein
    NP_001077721.1
    • Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT3G13740.1); Has 289 Blast hits to 288 proteins in 138 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_175910.2
    • Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT3G13740.1); Has 1541 Blast hits to 1540 proteins in 746 species: Archae - 0; Bacteria - 1385; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20572405..20574382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104387.4 → NP_175910.2  Ribonuclease III family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175910.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFZ9, A0A654EIK2, Q6NQK8
      Conserved Domains (1) summary
      cl00258
      Location:100 → 213
      RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...

    2. NM_001084252.1 → NP_001077721.1  Ribonuclease III family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077721.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MS04
      Conserved Domains (1) summary
      pfam00636
      Location:104 → 169
      Ribonuclease_3; Ribonuclease III domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools