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    Tudor/PWWP/MBT superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 5008017, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tudor/PWWP/MBT superfamily protein
    Primary source
    TAIR:AT3G21295
    Locus tag
    AT3G21295
    See related
    Araport:AT3G21295
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (7489167..7492896)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DOF zinc finger protein 2 Neighboring gene ubiquitin carboxyl-terminal hydrolase Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene RNA methyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene EARLY FLOWERING protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PWWP-DOMAIN INTERACTOR OF POLYCOMBS1 Interacts with Polycomb-Group Proteins and Histones and Regulates Arabidopsis Flowering and Development. Hohenstatt ML, et al. Plant Cell, 2018 Jan. PMID 29330200, Free PMC Article
    2. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PWO1 (and possibly also PWO2 and PWO3) may interact with PcG proteins to recruit them to subnuclear speckles and to mediate full H3/nucleosomal compaction. [PWO3]
      Title: PWWP-DOMAIN INTERACTOR OF POLYCOMBS1 Interacts with Polycomb-Group Proteins and Histones and Regulates Arabidopsis Flowering and Development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084726.2
    NM_001338523.1
    NM_001338524.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tudor/PWWP/MBT superfamily protein
    NP_001078195.1
    • Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G51745.1); Has 561 Blast hits to 428 proteins in 108 species: Archae - 2; Bacteria - 226; Metazoa - 60; Fungi - 64; Plants - 94; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7489167..7492896
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084726.2 → NP_001078195.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078195.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHB4, A0A384KD89, A0A5S9XEB0, F4IXJ0
      Conserved Domains (1) summary
      pfam00855
      Location:14 → 116
      PWWP; PWWP domain

    2. NM_001338523.1 → NP_001326783.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQC0, A0A5S9XEB0

    3. NM_001338524.1 → NP_001326782.1  Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQB9
    Nucleotide Protein
    Heading Accession and Version

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