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    Eif2c5l eukaryotic translation initiation factor 2C, 5 [ Mus musculus (house mouse) ]

    Gene ID: 286951, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Eif2c5lprovided by MGI
    Official Full Name
    eukaryotic translation initiation factor 2C, 5provided by MGI
    Primary source
    MGI:MGI:2446636
    See related
    Ensembl:ENSMUSG00000085146 AllianceGenome:MGI:2446636
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ago5; Lnc10; Eif2c5
    Summary
    Enables RNA binding activity. Part of RISC complex. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Eif2c5l in Genome Data Viewer
    Location:
    X F1; X 61.47 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (139676948..139697693)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (140776199..140796944)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene glycine cleavage system protein H (aminomethyl carrier) pseudogene Neighboring gene midline 2 Neighboring gene predicted gene, 23199 Neighboring gene STARR-seq mESC enhancer starr_48009 Neighboring gene eukaryotic translation initiation factor 2C, 2 pseudogene Neighboring gene testis expressed 13B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A long noncoding RNA binding to QKI-5 regulates germ cell apoptosis via p38 MAPK signaling pathway. Li K, et al. Cell Death Dis, 2019 Sep 20. PMID 31541077, Free PMC Article
    2. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Chi SW, et al. Nature, 2009 Jul 23. PMID 19536157, Free PMC Article
    3. The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Carmell MA, et al. Genes Dev, 2002 Nov 1. PMID 12414724
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • argonaute 5

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RISC complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_164359.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL672306, BX470203
      Related
      ENSMUST00000256536.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      139676948..139697693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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