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    C13h1orf21 similar to human chromosome 1 open reading frame 21 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289084, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C13h1orf21provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 21provided by RGD
    Primary source
    RGD:1309104
    See related
    EnsemblRapid:ENSRNOG00000028236 AllianceGenome:RGD:1309104
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309104
    Summary
    Orthologous to human C1orf21 (chromosome 1 open reading frame 21). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 167.8), Muscle (RPKM 135.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C13h1orf21 in Genome Data Viewer
    Location:
    13q21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (66540245..66749631, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (63982587..64199676, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (69265649..69434447, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene ER degradation enhancing alpha-mannosidase like protein 3 Neighboring gene ribosomal protein L23A like 9 Neighboring gene uncharacterized LOC120096277 Neighboring gene uncharacterized LOC108352552 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120096278

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C1orf21 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105959.2 → NP_001099429.1  uncharacterized protein C1orf21 homolog

      See identical proteins and their annotated locations for NP_001099429.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A8I6A0H8, A6ICT2, D3ZU88
      Related
      ENSRNOP00000056553.2, ENSRNOT00000059807.5
      Conserved Domains (1) summary
      pfam15389
      Location:2 → 118
      DUF4612; Domain of unknown function (DUF4612)

    2. NM_001433973.1 → NP_001420902.1  uncharacterized protein C1orf21 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A8I6A0H8, A6ICT2, D3ZU88

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      66540245..66749631 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039090444.2 → XP_038946372.1  uncharacterized protein C1orf21 homolog isoform X1

      Conserved Domains (1) summary
      pfam15389
      Location:2 → 118
      DUF4612; Domain of unknown function (DUF4612)

    2. XM_063272097.1 → XP_063128167.1  uncharacterized protein C1orf21 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I6A0H8, A6ICT2, D3ZU88
    Nucleotide Protein Strain
    Heading Accession and Version

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