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    NHIP neuronal hypoxia inducible, placenta associated [ Homo sapiens (human) ]

    Gene ID: 105373085, updated on 10-Dec-2024

    Summary

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    Official Symbol
    NHIPprovided by HGNC
    Official Full Name
    neuronal hypoxia inducible, placenta associatedprovided by HGNC
    Primary source
    HGNC:HGNC:55561
    See related
    Ensembl:ENSG00000286381 AllianceGenome:HGNC:55561
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See NHIP in Genome Data Viewer
    Location:
    22q13.32
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (49043919..49052385, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (49548357..49556823, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (49439731..49448197, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:49191875-49192796 Neighboring gene microRNA 4535 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49232881-49233408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49252199-49252698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49264603-49265104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49265105-49265604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49267795-49268295 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63550 Neighboring gene long intergenic non-protein coding RNA 1310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49298268-49298768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49315147-49315667 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63573 Neighboring gene MPRA-validated peak4515 silencer Neighboring gene Sharpr-MPRA regulatory region 10948 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49355769-49356614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49411058-49411949 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49414603-49415102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49416620-49417120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49417121-49417621 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:49430339-49431262 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:49444419-49444575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19277 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49472572-49473132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49473133-49473691 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr22:49479476-49480675 Neighboring gene uncharacterized LOC105373086 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:49492353-49492524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49492933-49493434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49493435-49493934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49494904-49495901 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63615 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63621 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49546439-49546996 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49548111-49548668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49576267-49576766 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49579645-49580415 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:49583849-49585048 Neighboring gene MPRA-validated peak4516 silencer Neighboring gene ribosomal protein L35 pseudogene 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism. Zhu Y, et al. Genome Biol, 2022 Feb 16. PMID 35168652, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183575.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622

    2. NR_183576.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622
      Related
      ENST00000669789.1

    3. NR_183577.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622
      Related
      ENST00000657875.2

    4. NR_183578.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622

    5. NR_183579.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622

    6. NR_183580.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622
      Related
      ENST00000665699.1

    7. NR_183581.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622

    8. NR_183582.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622

    9. NR_183583.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622

    10. NR_183584.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078622

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      49043919..49052385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      49548357..49556823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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