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    AFG1-like ATPase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828922, updated on 18-Sep-2024

    Summary

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    Official Full Name
    AFG1-like ATPase family protein
    Primary source
    TAIR:AT4G28070
    Locus tag
    AT4G28070
    See related
    Araport:AT4G28070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T13J8.180; T13J8_180
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (13945892..13948627)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene tetraspanin7 Neighboring gene Cytochrome c oxidase, subunit Vib family protein Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036660.3
    NM_118946.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    AFG1-like ATPase family protein
    NP_001031737.1
    • AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G30490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_194536.2
    • AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G30490.1); Has 4088 Blast hits to 4073 proteins in 1161 species: Archae - 0; Bacteria - 2068; Metazoa - 141; Fungi - 206; Plants - 104; Viruses - 0; Other Eukaryotes - 1569 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13945892..13948627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118946.3 → NP_194536.2  AFG1-like ATPase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194536.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWZ4, F4JKH5
      Conserved Domains (2) summary
      COG1485
      Location:62 → 455
      YhcM; Predicted ATPase [General function prediction only]
      cl21455
      Location:62 → 451
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_001036660.3 → NP_001031737.1  AFG1-like ATPase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031737.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWZ4, A0A654FTH3, Q5XET7
      Conserved Domains (1) summary
      COG1485
      Location:62 → 464
      YhcM; Predicted ATPase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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