U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01355 long intergenic non-protein coding RNA 1355 [ Homo sapiens (human) ]

    Gene ID: 100996511, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01355provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1355provided by HGNC
    Primary source
    HGNC:HGNC:50584
    See related
    AllianceGenome:HGNC:50584
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HYPAL
    Expression
    Ubiquitous expression in skin (RPKM 4.3), prostate (RPKM 1.6) and 22 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01355 in Genome Data Viewer
    Location:
    1p36.12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (23281309..23285518, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (23114448..23118657, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (23607802..23612011, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 1D Neighboring gene MPRA-validated peak115 silencer Neighboring gene MPRA-validated peak116 silencer Neighboring gene Sharpr-MPRA regulatory region 9970 Neighboring gene ribosomal protein L29 pseudogene 6 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:23589770-23590604 Neighboring gene heterogeneous nuclear ribonucleoprotein R Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 409 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:23670710-23671294 Neighboring gene MIR1 retrotransposon enhancer-blocking element Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:23683836-23684671 Neighboring gene Sharpr-MPRA regulatory region 11811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 361 Neighboring gene ZNF436 antisense RNA 1 Neighboring gene zinc finger protein 436

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110616.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL109936, BQ007283, BX113324

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      23281309..23285518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_014040926.1 Reference GRCh38.p14 PATCHES

      Range
      51288..55497 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      23114448..23118657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)