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    TIMP4 TIMP metallopeptidase inhibitor 4 [ Homo sapiens (human) ]

    Gene ID: 7079, updated on 10-Dec-2024

    Summary

    Official Symbol
    TIMP4provided by HGNC
    Official Full Name
    TIMP metallopeptidase inhibitor 4provided by HGNC
    Primary source
    HGNC:HGNC:11823
    See related
    Ensembl:ENSG00000157150 MIM:601915; AllianceGenome:HGNC:11823
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TIMP-4
    Summary
    This gene belongs to the TIMP gene family. The proteins encoded by this gene family are inhibitors of the matrix metalloproteinases, a group of peptidases involved in degradation of the extracellular matrix. The secreted, netrin domain-containing protein encoded by this gene is involved in regulation of platelet aggregation and recruitment and may play role in hormonal regulation and endometrial tissue remodeling. [provided by RefSeq, Jul 2008]
    Expression
    Biased expression in fat (RPKM 76.2) and brain (RPKM 10.2) See more
    Orthologs
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    Genomic context

    See TIMP4 in Genome Data Viewer
    Location:
    3p25.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (12153068..12158912, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (12151357..12157146, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (12194568..12200412, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr3:12003099-12003242 Neighboring gene RNA, 7SL, cytoplasmic 147, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:12046587-12047087 Neighboring gene synapsin II Neighboring gene Sharpr-MPRA regulatory region 7614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:12100621-12101122 Neighboring gene actin gamma 1 pseudogene 12 Neighboring gene Sharpr-MPRA regulatory region 15359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19435 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14064 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:12219651-12220850 Neighboring gene MT-CO1 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19436 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19437 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19438 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:12265535-12266263 Neighboring gene glutathione S-transferase mu 5 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    General gene information

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables metal ion binding  
    enables metalloendopeptidase inhibitor activity  
    enables metalloendopeptidase inhibitor activity PubMed 
    Process Evidence Code Pubs
    involved_in Notch signaling pathway  
    involved_in negative regulation of membrane protein ectodomain proteolysis  
    involved_in response to cytokine  
    involved_in response to hormone  
    Component Evidence Code Pubs
    is_active_in extracellular matrix  
    is_active_in extracellular space  

    General protein information

    Preferred Names
    metalloproteinase inhibitor 4
    Names
    tissue inhibitor of metalloproteinase 4
    tissue inhibitor of metalloproteinases 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_003256.4 → NP_003247.1  metalloproteinase inhibitor 4 precursor

      See identical proteins and their annotated locations for NP_003247.1

      Status: REVIEWED

      Source sequence(s)
      BC010553
      Consensus CDS
      CCDS2608.1
      UniProtKB/Swiss-Prot
      B2R7K6, Q99727
      Related
      ENSP00000287814.4, ENST00000287814.5
      Conserved Domains (1) summary
      cd03585
      Location:30 → 213
      NTR_TIMP; NTR domain, TIMP subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling. They form complexes with matrix metalloproteases (MMPs) and inactivate them irreversibly by ...

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      12153068..12158912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      12151357..12157146 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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