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    1700001K19Rikl RIKEN cDNA 1700001K19 gene like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299330, updated on 17-Aug-2024

    Summary

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    Official Symbol
    1700001K19Riklprovided by RGD
    Official Full Name
    RIKEN cDNA 1700001K19 gene likeprovided by RGD
    Primary source
    RGD:1305298
    See related
    EnsemblRapid:ENSRNOG00000007184 AllianceGenome:RGD:1305298
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tsp26; RGD1305298
    Expression
    Biased expression in Testes (RPKM 96.7), Brain (RPKM 53.7) and 9 other tissues See more
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    Genomic context

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    See 1700001K19Rikl in Genome Data Viewer
    Location:
    6q32
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (135502831..135523451, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (129681598..129697052, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (135085566..135098513, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120103624 Neighboring gene dynein cytoplasmic 1 heavy chain 1 Neighboring gene uncharacterized LOC102549239 Neighboring gene heat shock protein 90 alpha family class A member 1 Neighboring gene ribosomal protein L35A like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC299330
    Names
    testis specific protein 26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134526.1 → NP_001127998.1  uncharacterized protein LOC299330

      See identical proteins and their annotated locations for NP_001127998.1

      Status: PREDICTED

      Source sequence(s)
      CH474034
      UniProtKB/TrEMBL
      A6KBM4, D3ZSX0
      Related
      ENSRNOP00000009444.5, ENSRNOT00000009444.8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      135502831..135523451 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039112092.2 → XP_038968020.1  uncharacterized protein LOC299330 isoform X1

      UniProtKB/TrEMBL
      A6KBM4, D3ZSX0

    2. XM_039112081.2 → XP_038968009.1  uncharacterized protein LOC299330 isoform X1

      UniProtKB/TrEMBL
      A6KBM4, D3ZSX0

    3. XM_039112089.2 → XP_038968017.1  uncharacterized protein LOC299330 isoform X1

      UniProtKB/TrEMBL
      A6KBM4, D3ZSX0

    4. XM_063261783.1 → XP_063117853.1  uncharacterized protein LOC299330 isoform X2

    5. XM_039112087.2 → XP_038968015.1  uncharacterized protein LOC299330 isoform X1

      UniProtKB/TrEMBL
      A6KBM4, D3ZSX0

    6. XM_039112093.2 → XP_038968021.1  uncharacterized protein LOC299330 isoform X2

    7. XM_039112086.2 → XP_038968014.1  uncharacterized protein LOC299330 isoform X1

      UniProtKB/TrEMBL
      A6KBM4, D3ZSX0

    8. XM_039112085.2 → XP_038968013.1  uncharacterized protein LOC299330 isoform X1

      UniProtKB/TrEMBL
      A6KBM4, D3ZSX0

    9. XM_039112090.2 → XP_038968018.1  uncharacterized protein LOC299330 isoform X1

      UniProtKB/TrEMBL
      A6KBM4, D3ZSX0

    10. XM_063261782.1 → XP_063117852.1  uncharacterized protein LOC299330 isoform X2

    11. XM_039112082.2 → XP_038968010.1  uncharacterized protein LOC299330 isoform X1

      UniProtKB/TrEMBL
      A6KBM4, D3ZSX0
    Nucleotide Protein Strain
    Heading Accession and Version

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