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    Rfesd Rieske (Fe-S) domain containing [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361871, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rfesdprovided by RGD
    Official Full Name
    Rieske (Fe-S) domain containingprovided by RGD
    Primary source
    RGD:1308284
    See related
    EnsemblRapid:ENSRNOG00000012810 AllianceGenome:RGD:1308284
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308284
    Summary
    Predicted to enable 2 iron, 2 sulfur cluster binding activity. Orthologous to human RFESD (Rieske Fe-S domain containing). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 59.6), Spleen (RPKM 58.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rfesd in Genome Data Viewer
    Location:
    2q11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (7220389..7254394, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (5495067..5521095, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (2758382..2784366, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene glutaredoxin Neighboring gene Rho-related BTB domain containing 3 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene spermatogenesis associated 9 Neighboring gene G protein-coupled receptor 150 Neighboring gene arylsulfatase family, member K

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Rieske domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108540.1 → NP_001102010.1  Rieske domain-containing protein

      See identical proteins and their annotated locations for NP_001102010.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473955
      UniProtKB/TrEMBL
      A6I4F6, D3ZF58
      Related
      ENSRNOP00000017098.4, ENSRNOT00000017098.7
      Conserved Domains (1) summary
      cd03467
      Location:15 → 93
      Rieske; Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      7220389..7254394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102505.2 → XP_038958433.1  Rieske domain-containing protein isoform X2

      UniProtKB/TrEMBL
      A6I4F6, D3ZF58
      Conserved Domains (1) summary
      cd03467
      Location:15 → 93
      Rieske; Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. ...

    2. XM_006231706.5 → XP_006231768.1  Rieske domain-containing protein isoform X2

      See identical proteins and their annotated locations for XP_006231768.1

      UniProtKB/TrEMBL
      A6I4F6, D3ZF58
      Conserved Domains (1) summary
      cd03467
      Location:15 → 93
      Rieske; Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. ...

    3. XM_006231709.4 → XP_006231771.1  Rieske domain-containing protein isoform X2

      See identical proteins and their annotated locations for XP_006231771.1

      UniProtKB/TrEMBL
      A6I4F6, D3ZF58
      Conserved Domains (1) summary
      cd03467
      Location:15 → 93
      Rieske; Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. ...

    4. XM_039102504.2 → XP_038958432.1  Rieske domain-containing protein isoform X2

      UniProtKB/TrEMBL
      A6I4F6, D3ZF58
      Conserved Domains (1) summary
      cd03467
      Location:15 → 93
      Rieske; Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. ...

    5. XM_039102503.2 → XP_038958431.1  Rieske domain-containing protein isoform X1

      Conserved Domains (1) summary
      cd03467
      Location:16 → 94
      Rieske; Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. ...

    6. XM_006231708.4 → XP_006231770.1  Rieske domain-containing protein isoform X2

      See identical proteins and their annotated locations for XP_006231770.1

      UniProtKB/TrEMBL
      A6I4F6, D3ZF58
      Conserved Domains (1) summary
      cd03467
      Location:15 → 93
      Rieske; Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. ...

    RNA

    1. XR_005500308.2 RNA Sequence

    2. XR_005500309.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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