U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tmem104 transmembrane protein 104 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303670, updated on 4-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    Tmem104provided by RGD
    Official Full Name
    transmembrane protein 104provided by RGD
    Primary source
    RGD:1307953
    See related
    EnsemblRapid:ENSRNOG00000025669 AllianceGenome:RGD:1307953
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307953
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM104 (transmembrane protein 104). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Biased expression in Kidney (RPKM 33.6), Adrenal (RPKM 26.7) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tmem104 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (100926219..100984870)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (100427244..100485890)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (103737162..103795751)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene RAB37, member RAS oncogene family Neighboring gene Cd300 molecule-like family member F Neighboring gene NHERF family PDZ scaffold protein 1 Neighboring gene N-acetyltransferase 9 Neighboring gene uncharacterized LOC134480900 Neighboring gene glutamate ionotropic receptor NMDA type subunit 2C Neighboring gene ferredoxin reductase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transmembrane protein 104

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191655.1 → NP_001178584.1  transmembrane protein 104

      See identical proteins and their annotated locations for NP_001178584.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A0A8I6A1J9, D3ZU40
      Related
      ENSRNOP00000051915.2, ENSRNOT00000055037.5
      Conserved Domains (2) summary
      COG0814
      Location:21 → 487
      SdaC; Amino acid permease [Amino acid transport and metabolism]
      cl00456
      Location:25 → 441
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      100926219..100984870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039086190.2 → XP_038942118.1  transmembrane protein 104 isoform X3

      Conserved Domains (1) summary
      cl00456
      Location:22 → 59
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_039086189.1 → XP_038942117.1  transmembrane protein 104 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A1J9
      Conserved Domains (1) summary
      cl00456
      Location:25 → 440
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. XM_039086191.2 → XP_038942119.1  transmembrane protein 104 isoform X4

      UniProtKB/TrEMBL
      A6HKL1
      Conserved Domains (1) summary
      cl00456
      Location:22 → 59
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    4. XM_006247715.5 → XP_006247777.1  transmembrane protein 104 isoform X1

      See identical proteins and their annotated locations for XP_006247777.1

      UniProtKB/TrEMBL
      A0A8I6A1J9, D3ZU40
      Conserved Domains (2) summary
      COG0814
      Location:21 → 487
      SdaC; Amino acid permease [Amino acid transport and metabolism]
      cl00456
      Location:25 → 441
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    5. XM_039086192.1 → XP_038942120.1  transmembrane protein 104 isoform X5

      Conserved Domains (1) summary
      cl00456
      Location:18 → 213
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools