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    Ociad2 OCIA domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 433904, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ociad2provided by MGI
    Official Full Name
    OCIA domain containing 2provided by MGI
    Primary source
    MGI:MGI:1916377
    See related
    Ensembl:ENSMUSG00000029153 AllianceGenome:MGI:1916377
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810027I20Rik
    Summary
    Acts upstream of or within response to bacterium. Located in mitochondrial inner membrane. Is expressed in cerebral cortex ventricular layer and cortical plate. Orthologous to human OCIAD2 (OCIA domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in frontal lobe adult (RPKM 17.9), bladder adult (RPKM 14.8) and 16 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ociad2 in Genome Data Viewer
    Location:
    5 C3.3; 5 38.54 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (73479541..73496290, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (73322198..73338947, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13383 Neighboring gene predicted gene, 40316 Neighboring gene STARR-seq mESC enhancer starr_13384 Neighboring gene OCIA domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_13385 Neighboring gene predicted gene, 34496 Neighboring gene STARR-seq mESC enhancer starr_13386 Neighboring gene predicted gene, 34583

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Chemically induced (ENU) (1) 
    • Endonuclease-mediated (2) 

    General protein information

    Preferred Names
    OCIA domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310636.1NP_001297565.1  OCIA domain-containing protein 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) has a shorter, distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AC108828
      Consensus CDS
      CCDS80301.1
      UniProtKB/TrEMBL
      A0A0J9YU56, A0A0J9YUI7
      Related
      ENSMUSP00000144012.2, ENSMUST00000201908.4
      Conserved Domains (1) summary
      pfam07051
      Location:1288
      OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)
    2. NM_026950.4NP_081226.1  OCIA domain-containing protein 2 isoform 1

      See identical proteins and their annotated locations for NP_081226.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC108828, AK007617, CJ146723
      Consensus CDS
      CCDS19340.1
      UniProtKB/Swiss-Prot
      Q9D8W7
      Related
      ENSMUSP00000084445.6, ENSMUST00000087195.9
      Conserved Domains (1) summary
      pfam07051
      Location:33117
      OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      73479541..73496290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)