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    A330069K06Rik RIKEN cDNA A330069K06 gene [ Mus musculus (house mouse) ]

    Gene ID: 213544, updated on 22-Oct-2024

    Summary

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    Official Symbol
    A330069K06Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A330069K06 geneprovided by MGI
    Primary source
    MGI:MGI:2685464
    See related
    Ensembl:ENSMUSG00000103181 Ensembl:ENSMUSG00000134812 AllianceGenome:MGI:2685464
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm618
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See A330069K06Rik in Genome Data Viewer
    Location:
    3; 3 E3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (79967179..80120414)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3438 Neighboring gene transmembrane protein 144 Neighboring gene STARR-seq mESC enhancer starr_08010 Neighboring gene STARR-seq mESC enhancer starr_08011 Neighboring gene predicted gene, 26420 Neighboring gene STARR-seq mESC enhancer starr_08012 Neighboring gene STARR-seq mESC enhancer starr_08013 Neighboring gene golgi associated kinase 1B Neighboring gene VISTA enhancer mm1052 Neighboring gene STARR-seq mESC enhancer starr_08014 Neighboring gene STARR-seq mESC enhancer starr_08015 Neighboring gene STARR-seq mESC enhancer starr_08016 Neighboring gene STARR-seq mESC enhancer starr_08017 Neighboring gene eukaryotic translation initiation factor 3, subunit M pseudogene Neighboring gene STARR-seq mESC enhancer starr_08018 Neighboring gene predicted gene, 57716 Neighboring gene glutamate receptor, ionotropic, AMPA2 (alpha 2)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000069.7 Chromosome 3 Reference GRCm39 C57BL/6J

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      79967179..80120414
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004941587.1 RNA Sequence

    2. XR_004941591.1 RNA Sequence

    3. XR_004941588.1 RNA Sequence

      Related
      ENSMUST00000327080.1

    4. XR_004941592.1 RNA Sequence

      Related
      ENSMUST00000327079.1

    5. XR_004941593.1 RNA Sequence

      Related
      ENSMUST00000327075.1

    6. XR_004941590.1 RNA Sequence

      Related
      ENSMUST00000327074.1

    7. XR_004941589.1 RNA Sequence

      Related
      ENSMUST00000327072.1

    8. XR_004941594.1 RNA Sequence

      Related
      ENSMUST00000320030.1
    Nucleotide Protein Strain
    Heading Accession and Version

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