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    RTV1 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841372, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RTV1
    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT1G49480
    Locus tag
    AT1G49480
    See related
    Araport:AT1G49480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13F21.8; F13F21_8; related to vernalization1 1
    Summary
    Encodes a nuclear-localized DNA-binding protein that interacts with ITN1 at the PM and nuclei in vivo and may regulate ITN's subcellular localization.
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    Genomic context

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    See RTV1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (18314117..18316861, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane epididymal protein (DUF716) Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene transcription initiation factor TFIID subunit 1b-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interaction between a plasma membrane-localized ankyrin-repeat protein ITN1 and a nuclear protein RTV1. Sakamoto H, et al. Biochem Biophys Res Commun, 2012 Jun 29. PMID 22664102
    2. Ca2+-dependent GTPase, extra-large G protein 2 (XLG2), promotes activation of DNA-binding protein related to vernalization 1 (RTV1), leading to activation of floral integrator genes and early flowering in Arabidopsis. Heo JB, et al. J Biol Chem, 2012 Mar 9. PMID 22232549, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These findings suggest that RTV1 and ITN1 regulate the subcellular localization of each other.
      Title: Interaction between a plasma membrane-localized ankyrin-repeat protein ITN1 and a nuclear protein RTV1.
    2. a Ca(2+)-dependent G protein, XLG2, promotes RTV1 DNA binding activity for a subset of floral integrator genes and contributes to floral transition.
      Title: Ca2+-dependent GTPase, extra-large G protein 2 (XLG2), promotes activation of DNA-binding protein related to vernalization 1 (RTV1), leading to activation of floral integrator genes and early flowering in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333384.1
    NM_001333385.1
    NM_103836.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001322051.1
    • related to vernalization1 1
    NP_001322052.1
    • related to vernalization1 1
    NP_564547.1
    • related to vernalization1 1 (RTV1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G18990.1); Has 354 Blast hits to 329 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 352; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18314117..18316861 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103836.4 → NP_564547.1  uncharacterized protein AT1G49480 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564547.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94B43, Q9XIB5
      UniProtKB/TrEMBL
      A0A178WGV0, A0A5S9WN86, A0A654EGW5
      Conserved Domains (1) summary
      pfam02362
      Location:129 → 223
      B3; B3 DNA binding domain

    2. NM_001333384.1 → NP_001322052.1  uncharacterized protein AT1G49480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94B43, Q9XIB5
      UniProtKB/TrEMBL
      A0A178WGV0, A0A5S9WN86, A0A654EGW5
      Conserved Domains (1) summary
      pfam02362
      Location:129 → 223
      B3; B3 DNA binding domain

    3. NM_001333385.1 → NP_001322051.1  uncharacterized protein AT1G49480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94B43, Q9XIB5
      UniProtKB/TrEMBL
      A0A178WGV0, A0A5S9WN86, A0A654EGW5
      Conserved Domains (1) summary
      pfam02362
      Location:129 → 223
      B3; B3 DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XIB5.1

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