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    Garin5b golgi associated RAB2 interactor family member 5B [ Mus musculus (house mouse) ]

    Gene ID: 243822, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Garin5bprovided by MGI
    Official Full Name
    golgi associated RAB2 interactor family member 5Bprovided by MGI
    Primary source
    MGI:MGI:3045311
    See related
    Ensembl:ENSMUSG00000092518 AllianceGenome:MGI:3045311
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam71e2; 4930401F20Rik
    Summary
    Acts upstream of or within cell morphogenesis; single fertilization; and vacuole organization. Is active in sperm head. Orthologous to human GARIN5B (golgi associated RAB2 interactor family member 5B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 148.2) See more
    Orthologs
    human all
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    Genomic context

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    See Garin5b in Genome Data Viewer
    Location:
    7 A1; 7 2.75 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (4756225..4774362, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (4753226..4771363, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E127 Neighboring gene lysine methyltransferase 5C Neighboring gene STARR-seq mESC enhancer starr_17937 Neighboring gene cytochrome c oxidase subunit 6B2 Neighboring gene interleukin 11 Neighboring gene transmembrane protein 190 Neighboring gene transmembrane protein 238

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Golgi associated RAB2 interactor protein family contributes to murine male fertility to various extents by assuring correct morphogenesis of sperm heads. Wang H, et al. PLoS Genet, 2024 Jun. PMID 38935810, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within cell morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within single fertilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vacuole organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in sperm head IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Golgi-associated RAB2 interactor protein 5B
    Names
    family with sequence similarity 71, member E2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172895.3 → NP_766483.3  Golgi-associated RAB2 interactor protein 5B

      Status: PROVISIONAL

      Source sequence(s)
      AC161197, AC162034
      Consensus CDS
      CCDS57474.1
      UniProtKB/TrEMBL
      L7N480
      Related
      ENSMUSP00000133885.3, ENSMUST00000174409.2
      Conserved Domains (1) summary
      pfam12480
      Location:102 → 172
      DUF3699; Protein of unknown function (DUF3699)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      4756225..4774362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017322231.2 → XP_017177720.1  Golgi-associated RAB2 interactor protein 5B isoform X2

      Conserved Domains (1) summary
      pfam12480
      Location:102 → 172
      DUF3699; Protein of unknown function (DUF3699)

    2. XM_017322230.2 → XP_017177719.1  Golgi-associated RAB2 interactor protein 5B isoform X1

      Conserved Domains (1) summary
      pfam12480
      Location:102 → 172
      DUF3699; Protein of unknown function (DUF3699)
    Nucleotide Protein Strain
    Heading Accession and Version

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