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    Hdhd3 haloacid dehalogenase-like hydrolase domain containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 72748, updated on 9-Dec-2024

    Summary

    Official Symbol
    Hdhd3provided by MGI
    Official Full Name
    haloacid dehalogenase-like hydrolase domain containing 3provided by MGI
    Primary source
    MGI:MGI:1919998
    See related
    Ensembl:ENSMUSG00000038422 AllianceGenome:MGI:1919998
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810435D12Rik
    Summary
    Located in mitochondrion. Orthologous to human HDHD3 (haloacid dehalogenase like hydrolase domain containing 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in large intestine adult (RPKM 5.8), duodenum adult (RPKM 4.5) and 17 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Hdhd3 in Genome Data Viewer
    Location:
    4 B3; 4 33.16 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (62417291..62420437, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (62499054..62502200, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 31 Neighboring gene B-box and SPRY domain containing Neighboring gene aminolevulinate, delta-, dehydratase Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:62186055-62186242 Neighboring gene polymerase (DNA directed), epsilon 3 (p17 subunit)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    haloacid dehalogenase-like hydrolase domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024257.1NP_077219.1  haloacid dehalogenase-like hydrolase domain-containing protein 3

      See identical proteins and their annotated locations for NP_077219.1

      Status: PROVISIONAL

      Source sequence(s)
      BC003491
      Consensus CDS
      CCDS18242.1
      UniProtKB/Swiss-Prot
      Q9CYW4
      Related
      ENSMUSP00000036337.3, ENSMUST00000037820.3
      Conserved Domains (2) summary
      cd01427
      Location:102211
      HAD_like; Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, ...
      TIGR02252
      Location:8210
      DREG-2; REG-2-like, HAD superfamily (subfamily IA) hydrolase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      62417291..62420437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)