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    Pogk pogo transposable element with KRAB domain [ Mus musculus (house mouse) ]

    Gene ID: 71592, updated on 3-Dec-2024

    Summary

    Official Symbol
    Pogkprovided by MGI
    Official Full Name
    pogo transposable element with KRAB domainprovided by MGI
    Primary source
    MGI:MGI:1918842
    See related
    Ensembl:ENSMUSG00000040596 AllianceGenome:MGI:1918842
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BASS2; mKIAA1513; 9130401E23Rik
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human POGK (pogo transposable element derived with KRAB domain). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 2.2), CNS E14 (RPKM 2.1) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Pogk in Genome Data Viewer
    Location:
    1 H2.3; 1 73.75 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (166221179..166237402, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (166393610..166409853, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_02926 Neighboring gene maelstrom spermatogenic transposon silencer Neighboring gene immunoglobulin-like domain containing receptor 2 Neighboring gene STARR-positive B cell enhancer mm9_chr1:168290436-168290736 Neighboring gene STARR-seq mESC enhancer starr_02930 Neighboring gene STARR-positive B cell enhancer ABC_E11695 Neighboring gene transcriptional adaptor 1 Neighboring gene STARR-seq mESC enhancer starr_02931 Neighboring gene ubiquinol-cytochrome c reductase subunit pseudogene Neighboring gene predicted gene, 39694

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    pogo transposable element with KRAB domain

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142948.4NP_001136420.2  pogo transposable element with KRAB domain isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC161807
      Consensus CDS
      CCDS48432.1
      UniProtKB/Swiss-Prot
      Q80TC5, Q8BPJ3, Q8C887
      UniProtKB/TrEMBL
      A0A0R4J1T0
      Related
      ENSMUSP00000120352.4, ENSMUST00000135673.9
    2. NM_001405162.3NP_001392091.2  pogo transposable element with KRAB domain isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC161807
      UniProtKB/TrEMBL
      A0A0R4J1T0
    3. NM_001405163.3NP_001392092.2  pogo transposable element with KRAB domain isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC161807
      UniProtKB/TrEMBL
      A0A0R4J1T0
    4. NM_001405164.1NP_001392093.1  pogo transposable element with KRAB domain isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC161807
    5. NM_001405165.1NP_001392094.1  pogo transposable element with KRAB domain isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC161807
    6. NM_175170.7NP_780379.3  pogo transposable element with KRAB domain isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC161807
      Consensus CDS
      CCDS35762.1
      UniProtKB/Swiss-Prot
      Q80TC5, Q8BPJ3, Q8C887
      UniProtKB/TrEMBL
      A0A0R4J1T0
      Related
      ENSMUSP00000118270.4, ENSMUST00000128861.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      166221179..166237402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)