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    Ttc38 tetratricopeptide repeat domain 38 [ Mus musculus (house mouse) ]

    Gene ID: 239570, updated on 27-Nov-2024

    Summary

    Official Symbol
    Ttc38provided by MGI
    Official Full Name
    tetratricopeptide repeat domain 38provided by MGI
    Primary source
    MGI:MGI:2146198
    See related
    Ensembl:ENSMUSG00000035944 AllianceGenome:MGI:2146198
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9030019H09
    Summary
    Orthologous to human TTC38 (tetratricopeptide repeat domain 38). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in liver adult (RPKM 10.1), bladder adult (RPKM 8.2) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ttc38 in Genome Data Viewer
    Location:
    15 E2; 15 40.42 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (85716545..85743023)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (85832282..85858822)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5505 Neighboring gene cysteine rich, DPF motif domain containing 1 Neighboring gene polycystin (PKD) family receptor for egg jelly Neighboring gene STARR-seq mESC enhancer starr_39401 Neighboring gene G two S phase expressed protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E4144 Neighboring gene tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase Neighboring gene STARR-positive B cell enhancer ABC_E10874

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General protein information

    Preferred Names
    tetratricopeptide repeat protein 38
    Names
    TPR repeat protein 38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033337.5NP_001028509.2  tetratricopeptide repeat protein 38 isoform 1

      See identical proteins and their annotated locations for NP_001028509.2

      Status: VALIDATED

      Source sequence(s)
      AC117784, AC139513
      Consensus CDS
      CCDS27724.2
      UniProtKB/Swiss-Prot
      A3KMP2, Q05C02, Q05CK3, Q3UZU5
      Related
      ENSMUSP00000114504.2, ENSMUST00000146088.8
      Conserved Domains (1) summary
      cd05804
      Location:56419
      StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    2. NM_001416054.1NP_001402983.1  tetratricopeptide repeat protein 38 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC117784, AC139513
    3. NM_001416055.1NP_001402984.1  tetratricopeptide repeat protein 38 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC117784, AC139513
    4. NM_001416056.1NP_001402985.1  tetratricopeptide repeat protein 38 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC117784, AC139513

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      85716545..85743023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006520954.5XP_006521017.1  tetratricopeptide repeat protein 38 isoform X3

      Conserved Domains (1) summary
      cd05804
      Location:1198
      StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated ...