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    C1h9orf85 similar to human chromosome 9 open reading frame 85 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361740, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C1h9orf85provided by RGD
    Official Full Name
    similar to human chromosome 9 open reading frame 85provided by RGD
    Primary source
    RGD:1359158
    See related
    EnsemblRapid:ENSRNOG00000027161 AllianceGenome:RGD:1359158
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1359158
    Summary
    Orthologous to human C9orf85 (chromosome 9 open reading frame 85). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 91.8), Adrenal (RPKM 80.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C1h9orf85 in Genome Data Viewer
    Location:
    1q51
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (228562621..228624472, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (219136085..219197723, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (239207869..239265997, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene similar to human chromosome 9 open reading frame 57 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene abhydrolase domain containing 17B, depalmitoylase Neighboring gene uncharacterized LOC108348948

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC94797

    General protein information

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    Preferred Names
    uncharacterized protein C9orf85 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007737.1 → NP_001007738.1  uncharacterized protein C9orf85 homolog

      See identical proteins and their annotated locations for NP_001007738.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079346
      UniProtKB/Swiss-Prot
      Q68FU5
      UniProtKB/TrEMBL
      A6I0M5
      Related
      ENSRNOP00000094802.1, ENSRNOT00000112470.2
      Conserved Domains (1) summary
      pfam10217
      Location:14 → 101
      DUF2039; Uncharacterized conserved protein (DUF2039)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      228562621..228624472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039084319.2 → XP_038940247.1  uncharacterized protein C9orf85 homolog isoform X4

      Conserved Domains (1) summary
      pfam10217
      Location:14 → 69
      DUF2039; Uncharacterized conserved protein (DUF2039)

    2. XM_039084317.2 → XP_038940245.1  uncharacterized protein C9orf85 homolog isoform X3

      UniProtKB/Swiss-Prot
      Q68FU5
      UniProtKB/TrEMBL
      A6I0M5
      Conserved Domains (1) summary
      pfam10217
      Location:14 → 101
      DUF2039; Uncharacterized conserved protein (DUF2039)

    3. XM_039084321.2 → XP_038940249.1  uncharacterized protein C9orf85 homolog isoform X6

      Conserved Domains (1) summary
      pfam10217
      Location:12 → 42
      DUF2039; Uncharacterized conserved protein (DUF2039)

    4. XM_063268491.1 → XP_063124561.1  uncharacterized protein C9orf85 homolog isoform X5

    5. XM_063268484.1 → XP_063124554.1  uncharacterized protein C9orf85 homolog isoform X1

    6. XM_063268485.1 → XP_063124555.1  uncharacterized protein C9orf85 homolog isoform X2

    RNA

    1. XR_005488977.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q68FU5.1 GenPept UniProtKB/Swiss-Prot:Q68FU5

    Gene LinkOut

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